Chemical Biology Group

Research Interest

Chemical Biology Group (CBG) at FLSB, SAU is keenly interested in delineating the functional significance of polyketide lipids in the biology of Mycobacteria and related pathogenic Corynebacterineae. We attempt to identify biological role of polyketide synthases and polyketide modifying enzymes in pathogenesis of corynebacterineae members and dissect molecular intricacies mediating host-pathogen interplay. A multipronged approach is utilized in the laboratory that focuses on different aspects of the problem. Our interdisciplinary research works at the interface of biology, chemistry, physics and computational sciences and relies on latest tools and techniques in chemical biology including crystallography and mass spectrometry based high-resolution proteomics, metabolomics and lipidomics. Our extensive biochemical, protein engineering and chemical biology approaches have identified novel molecular potentials of key enzyme systems and products that facilitate mycobacterial survival in stationary biofilm pathogenic states. To dissect host-pathogen interactions we use Zebrafish as an in vivo system. Infection studies with CRISPR knockout and complemented strains of mycobacteria have revealed important immunological parameters during established active mycobacterial pathogenesis. Our research provides evidence for involvement of polyketide biosynthesizing systems in mediating molecular events that dictate pathogenic and persistent states of mycobacteria. These studies should potentially reveal new prospective drug-targets and provide leads for novel intervention strategies.
Polyketides are a family of structurally and chemically related metabolites with immense biological potentials and bioactivities. The unique chemical architecture of these natural products facilitates interactions with various bio-molecules conferring potent bio-functionalities. Our metabolomic
studies, aimed to dissect the molecular function of polyketide metabolites and associated modifications have unraveled chemically diverse and structurally distinct class of novel mycobacterial lipids. Biochemical and structural characterization of the polyketide biosynthetic and modifying enzymes have not only revealed their catalytic functioning but also provided clues to exploit these proteins for generating a series of architecturally and chemically distinct scaffolds with diverse bioactive potentials that can be further studied for their unique applications. Several of these molecules display therapeutic properties and are important to the cosmeceutical, nutraceutical and pharmaceutical industry. Using fundamentals of medicinal chemistry and drug discovery in conjunction with synthetic and combinatorial biology methods, we extensively work towards designing microbial hosts for specific production of novel bio-functional metabolites that can be utilized for mass production and translated for product development.

 CBG works with extensive collaborations with top laboratories in various research institutes and universities. Currently we have several openings for PhD and Postdoctoral positions, and space for Master project and summer internship students.

Group Members and Alumni:


Umesh Prasad Sah Hathi
PhD (SAU),
Ongoing Research: Investigating the Functional role of Type III PKSs in Mycobacterial Physiology and Pathogenesis using Host-Pathogen Model Systems

Gorkha Raj Giri
PhD (SAU), 2020
Research: Dissecting Role of Type Iii Polyketide Synthase, Methyltransferase and Sulfotransferase in the Biology of Corynebacterineae
Lecturer, National College (Biotechnology and Microbiology Program, affiliated with TU), National Model College for Advance Learning (B. Pharmacy Program, affiliated with TU), Visiting faculty Central Department of Biotechnology (TU), Visiting Faculty B.Tech in Biotech, Kantipur Valle College (affiliated with PU)

Amreesh Parvez
PhD (SAU), 2018
Research: Dissecting the functional role of lipid metabolizing enzymes in the biology of Corynebacterineae
Post Doc: Institute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Cape Town, South Africa
Post Doc: Jiangsu University. Zhenjiang, China

Samir Giri
SRF (CBG), 2012-2015 Research: Delineating functional potential of Corynebacterial Polyketide Synthases
PhD (Max Planck Institute for Chemical Ecology, Osnabrück University, Germany), 2021
PostDoc: EMBL, Germany

Renu Bisht
PhD (SAU),2022
Research: Dissecting the Functional Importance of Type III Polyketide Metabolites in Mycobacterial Biology
PostDoc: University of Milan, Italy

CBG has a big list of hard working and brilliant Master project students, summer interns and project consultants. We also housed a BAS-ISRF fellow from Bangladesh for short term research training. Alumni are well placed and involved in Postdoctoral/ PhD research/university teaching/company profiles.